Directory

The bioinformatics & lab software catalog

7 curated tools for computational biology, genomics, imaging, and the modern wet lab. Know one we're missing? Submit it.

Showing 1 - 7 of 7 tools
Liftoff.bio illustration — cat databases
Free

Public Databases

CZ CELLxGENE Census

Programmatic access to tens of millions of single cells

Web appREST APIPython library
Liftoff.bio illustration — post single cell
Free for academia

Single-Cell & Spatial

Arc State

A virtual cell model predicting perturbation responses

Python libraryModel weights
Liftoff.bio illustration — cat single cell
Open source

Single-Cell & Spatial

Squidpy

Spatial single-cell analysis in Python

Python library
Liftoff.bio illustration — cat single cell
Open source

Single-Cell & Spatial

AnnData

Annotated data matrices for single-cell at scale

Python library
Liftoff.bio illustration — cat single cell
Open source

Single-Cell & Spatial

scvi-tools

Probabilistic, deep-learning models for single-cell omics

Python library
Liftoff.bio illustration — cat single cell
Open source

Single-Cell & Spatial

Seurat

The R toolkit for single-cell genomics

R package
Liftoff.bio illustration — cat single cell
Open source

Single-Cell & Spatial

Scanpy

Scalable single-cell analysis in Python

Python library