Squidpy
Spatial single-cell analysis in Python
Squidpy brings spatial-omics analysis to the scverse ecosystem. It adds spatial graphs, neighborhood enrichment, co-occurrence statistics and image-feature extraction on top of AnnData.
Highlights
- Build and analyse spatial neighbor graphs.
- Compute Moran's I, Ripley's statistics and ligand–receptor interactions.
- Extract features from the paired tissue image.
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