The bioinformatics & lab software catalog

14 curated tools for computational biology, genomics, imaging, and the modern wet lab. Know one we're missing? Submit it.

Showing 1 - 12 of 14 tools

Open source

Lab Automation

PyLabRobot

One Python interface for any liquid-handling robot

Python libraryHardware

Liftoff.bio illustration — cat cheminformatics

Open source

Cheminformatics & Drug Discovery

Datamol

A friendly, modern molecular-processing library

Python library

Open source

Cheminformatics & Drug Discovery

Open Babel

The chemistry toolbox for converting molecular formats

Command linePython library

Open source

Cheminformatics & Drug Discovery

RDKit

The open-source cheminformatics toolkit

Python libraryCommand line

Liftoff.bio illustration — cat libraries

Open source

Libraries & SDKs

scikit-bio

Bioinformatics data structures and algorithms for Python

Python library

Open source

Libraries & SDKs

Bioconda

A conda channel with 10,000+ bioinformatics packages

Command line

Open source

Libraries & SDKs

Biotite

A fast, NumPy-native toolkit for sequence and structure

Python library

Open source

Libraries & SDKs

pysam

Pythonic access to SAM/BAM/CRAM/VCF via HTSlib

Python library

Open source

Libraries & SDKs

Bioconductor

2,000+ R packages for the analysis of genomic data

R package

Open source

Libraries & SDKs

Biopython

The foundational Python library for computational biology

Python library

Liftoff.bio illustration — cat single cell

Open source

Single-Cell & Spatial

AnnData

Annotated data matrices for single-cell at scale

Python library

Open source

Genomics & Sequencing

BCFtools

Call, filter and manipulate genomic variants (VCF/BCF)

Command line