scikit-bio offers well-documented building blocks for bioinformatics: biological sequences, multiple alignments, phylogenetic trees, and diversity/ordination methods widely used in microbiome research.
Highlights
- Sequence objects with alphabets, k-mers and alignment.
- Phylogenetics (UPGMA, neighbor-joining) and tree manipulation.
- Alpha/beta diversity and ordination (PCoA) for community ecology.
