Nextflow

Nextflow lets you compose pipelines as dataflow between processes, with built-in support for containers (Docker, Singularity, Wave), HPC schedulers and all major clouds.

Highlights

• Portable: the same pipeline runs on a laptop, Slurm, Kubernetes or AWS/GCP/Azure batch.
• Resumable execution and full provenance.
• Backed by nf-core, a large library of community pipelines.

Example

1process FASTQC {
2  input: path reads
3  output: path "*_fastqc.zip"
4  script: "fastqc ${reads}"
5}
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