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Ensembl

Genome annotation and comparative genomics

Ensembl is a comprehensive genome resource: assemblies, gene models, regulatory features, variation and cross-species comparisons, accessible via the browser, BioMart, REST API and Perl API.

Highlights

  • Annotated genomes for vertebrates, plants, microbes and more.
  • The VEP (Variant Effect Predictor) for interpreting variants.
  • BioMart for bulk data mining and a documented REST API.

Related tools

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Free

Public Databases

UniProt

The universal protein knowledgebase

Web appREST APIDataset
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Open source

Genomics & Sequencing

BCFtools

Call, filter and manipulate genomic variants (VCF/BCF)

Command line
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Open source

AI Models

Evo 2

A genome-scale DNA foundation model across all domains of life

Python libraryModel weightsREST API